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science/py-pymol: update 2.5.0-97 → 3.0.0
1 parent 6b15c10 commit 01e2cd1

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4 files changed

+45
-25
lines changed

4 files changed

+45
-25
lines changed

‎science/py-pymol/Makefile‎

Lines changed: 4 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,8 +1,6 @@
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PORTNAME= pymol
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DISTVERSIONPREFIX= v
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DISTVERSION= 2.5.0-97
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PORTREVISION= 2
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DISTVERSIONSUFFIX= -gd24468af
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DISTVERSION= 3.0.0
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CATEGORIES= science biology python
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PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
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@@ -19,15 +17,14 @@ BUILD_DEPENDS= ${PYNUMPY} \
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${LOCALBASE}/include/glm/glm.hpp:math/glm \
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${LOCALBASE}/include/mmtf.hpp:science/mmtf-cpp
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LIB_DEPENDS= libfreetype.so:print/freetype2 \
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libpng.so:graphics/png \
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libmsgpackc.so:devel/msgpack-c \
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libnetcdf.so:science/netcdf
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libnetcdf.so:science/netcdf \
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libpng16.so:graphics/png
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RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}msgpack>0:devel/py-msgpack@${PY_FLAVOR} \
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${PYTHON_PKGNAMEPREFIX}Pmw>0:x11-toolkits/py-Pmw@${PY_FLAVOR} \
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${PYNUMPY}
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USES= compiler:c++11-lang gl gnome python tar:bz2
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USE_GL= gl glew glu glut
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USE_GL= gl glew glu
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USE_GNOME= libxml2
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USE_PYTHON= distutils concurrent # autoplist is broken: https://github.com/schrodinger/pymol-open-source/issues/99
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‎science/py-pymol/distinfo‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,3 @@
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TIMESTAMP = 1669581024
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SHA256 (schrodinger-pymol-open-source-v2.5.0-97-gd24468af_GH0.tar.gz) = 801e8e71a02c56c07aacd241044e397586a435a4435b74845d779d9846c994af
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SIZE (schrodinger-pymol-open-source-v2.5.0-97-gd24468af_GH0.tar.gz) = 10495556
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TIMESTAMP = 1731825743
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SHA256 (schrodinger-pymol-open-source-v3.0.0_GH0.tar.gz) = 45e800a02680cec62dff7a0f92283f4be7978c13a02934a43ac6bb01f67622cf
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SIZE (schrodinger-pymol-open-source-v3.0.0_GH0.tar.gz) = 29510174

‎science/py-pymol/files/patch-setup.py‎

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -1,15 +1,15 @@
1-
--- setup.py.orig 2021-05-10 18:38:37 UTC
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--- setup.py.orig 2024-04-09 16:59:46 UTC
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+++ setup.py
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@@ -53,6 +53,8 @@ try:
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"shared library; no: disable fast MMTF load support")
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parser.add_argument('--help-distutils', action="store_true",
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help="show help for distutils options and exit")
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+ parser.add_argument('--single-version-externally-managed', action="store_true",
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+ help="single-version-externally-managed")
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parser.add_argument('--testing', action="store_true",
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help="Build C-level tests")
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parser.add_argument('--openvr', dest='openvr', action='store_true')
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@@ -282,7 +284,7 @@ if DEBUG and not WIN:
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@@ -60,6 +60,8 @@ parser.add_argument('--help-distutils', action="store_
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"shared library; no: disable fast MMTF load support")
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parser.add_argument('--help-distutils', action="store_true",
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help="show help for distutils options and exit")
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+parser.add_argument('--single-version-externally-managed', action="store_true",
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+ help="single-version-externally-managed")
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parser.add_argument('--testing', action="store_true",
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help="Build C-level tests")
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parser.add_argument('--openvr', dest='openvr', action='store_true')
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@@ -295,7 +297,7 @@ ext_comp_args = [
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libs = ["png", "freetype"]
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lib_dirs = []
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ext_comp_args = [

‎science/py-pymol/pkg-plist‎

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Original file line numberDiff line numberDiff line change
@@ -287,10 +287,6 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc
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%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc
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%%PYTHON_SITELIBDIR%%/pmg_tk/volume.py
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%%PYTHON_SITELIBDIR%%/pymol-2.6.0a0-py%%PYTHON_VER%%.egg-info/PKG-INFO
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%%PYTHON_SITELIBDIR%%/pymol-2.6.0a0-py%%PYTHON_VER%%.egg-info/SOURCES.txt
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%%PYTHON_SITELIBDIR%%/pymol-2.6.0a0-py%%PYTHON_VER%%.egg-info/dependency_links.txt
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%%PYTHON_SITELIBDIR%%/pymol-2.6.0a0-py%%PYTHON_VER%%.egg-info/top_level.txt
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%%PYTHON_SITELIBDIR%%/pymol/Qt/__init__.py
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%%PYTHON_SITELIBDIR%%/pymol/Qt/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc
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%%PYTHON_SITELIBDIR%%/pymol/Qt/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc
@@ -499,6 +495,10 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/asp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/asph.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/atp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/atpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/atpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/atp_ttpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/atp_ttpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/benzene.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/benzocycloheptane.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/butane.pkl
@@ -530,6 +530,10 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ct_tyr.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ct_val.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ctp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ctpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ctpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ctp_gtpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ctp_gtpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/cyanide.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/cyclobutane.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/cycloheptane.pkl
@@ -547,6 +551,10 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gluh.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gly.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gtp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gtpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gtpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gtp_ctpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/gtp_ctpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/hid.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/hie.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/hip.pkl
@@ -601,8 +609,13 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/trifluoromethane.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/trp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ttp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ttpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ttpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ttp_atpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/ttp_atpB.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/tyr.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/utp.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/utpA.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/fragments/val.pkl
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/sidechains/generate1.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/chempy/sidechains/generate2.py
@@ -664,7 +677,12 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/icons/icon2.svg
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/matrices/BLOSUM62
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/pymol/splash.png
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/setting_help.csv
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/anaglyph_header.fs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/bezier.fs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/bezier.tsc
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/bezier.tse
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/bezier.vs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/bg.fs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/bg.vs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/call_compute_color_for_light.fs
@@ -705,6 +723,11 @@ bin/pymol
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/webgl_header.fs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/shaders/webgl_header.vs
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/README.txt
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/apbs_gui/__init__.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/apbs_gui/apbs.ui
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/apbs_gui/creating.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/apbs_gui/electrostatics.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/apbs_gui/qtwidgets.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/lightingsettings_gui/__init__.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/startup/lightingsettings_gui/main.py
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%%PYTHON_SITELIBDIR%%/pymol/pymol_path/data/test/double.png

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