Merge pull request #65 from TheDataRideAlongs/issue-62

Added code to allow for passing in graph object to the DrugSynonymsTo…

Author: bechbd

.gitignore

@@ -152,3 +152,16 @@ localKeys
 localKeys/
 modules/__pycache__/
 
+.installed.cfg
+bin
+develop-eggs
+dist
+downloads
+eggs
+parts
+*.egg-info
+lib
+lib64
+__pycache__
+
+neo4jcreds.json

IngestDrugSynonymsWF.py

@@ -1,6 +1,7 @@
 
 from modules.IngestDrugSynonyms import IngestDrugSynonyms
 from modules.DrugSynonymDataToNeo4j import DrugSynonymDataToNeo4j
+from modules.Neo4jDataAccess import Neo4jDataAccess
 
 import logging
 
@@ -11,7 +12,8 @@
 drugSynonym.create_drug_study_links()
 drugSynonym.create_url_study_links()
 
-neo4jBridge = DrugSynonymDataToNeo4j()
+neo4jBridge = DrugSynonymDataToNeo4j(
+    graph=Neo4jDataAccess().get_neo4j_graph(Neo4jDataAccess.RoleType.WRITER))
 
 neo4jBridge.merge_drugs(drugSynonym.drugs)
 neo4jBridge.merge_synonyms(drugSynonym.synonyms)
@@ -23,4 +25,3 @@
 
 neo4jBridge.merge_url(drugSynonym.urls)
 neo4jBridge.merge_url_to_study_rels(drugSynonym.url_points_at_study_edges)
-

Pipfile

@@ -0,0 +1,12 @@
+[[source]]
+name = "pypi"
+url = "https://pypi.org/simple"
+verify_ssl = true
+
+[dev-packages]
+
+[packages]
+aiohttp = "*"
+
+[requires]
+python_version = "3.7"