biology/babel: Update WWW

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Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>

*/*: Remove redundant '-*' from CONFLICTS definitions

The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").

Approved by: portmgr (blanket)

all: Remove all other $FreeBSD keywords.

Remove # $FreeBSD$ from Makefiles.

Unbreak the build on PowerPC (at least) by always using va_copy() macro for
copying variable argument lists, not just on AMD64.

Remove $FreeBSD$ from patches files in categories a-j.

With hat:	portmgr
Sponsored by:	Absolight

Rename biology/ patch-xy patches to reflect the files they modify.

Support stage
Reduce over inclusions of bsd.port.mk
Use BROKEN_${ARCH}

Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PLIST_FILES, PORTDATA and PORTDOCS;
. use standard DATADIR and DOCSDIR (rather PREFIX/foo/bar);
. remove pkg-plist.

- Mark conflict with science/openbabel
- Trim Makefile header

Fix build with clang

- Get Rid MD5 support

Mark various ports as broken or ignore on powerpc.

While here, remove remnants of alpha.

- Add SHA256

- Remove obsolete MASTER_SITES

PR:             ports/67690
Submitted by:   Roman Neuhauser <neuhauser@chello.cz>

- Fix build on AMD64
- Use DOCSDIR

Add SIZE.

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

De-pkg-comment.

update biology/babel to properly output mm3 files.

PR:             ports/42425
Submitted by:   Glenn Johnson <glennpj@charter.net>

* Replace pkg-message about setting BABEL_DIR with a wrapper script     that
does.   * Remove misleading full path name from usage message.   * Improve
fgets() usage.   * Add converters category.   * Improve pkg-comment and
pkg-descr.    

- Update MASTER_SITES and WWW: line   - Support CC/CFLAGS properly   - Support
install macros   - Add PORTDOCS to pkg-plist    

pass maintainership to ports@.    

Massive style enforcement - use ^I instead of spaces for variables identation.  
 

Convert category biology to new layout.