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1. VCF-to-BED VCF-to-BED Public

   Forked from Nolan1324/VCF-to-BED

   Converts a VCF file to a BED file

   Python

2. parse_raw_vcf parse_raw_vcf Public

   Forked from hwangjc/parse_raw_vcf

   Python script to parse vcf files by deleting metadata and keeping only selected columns.

   Python

3. TCGA-query-generator TCGA-query-generator Public

   Forked from Nolan1324/TCGA-query-generator

   Windows graphical interface for easily downloading and generating queries from the GDC Data Portal

   C#

4. get_vcf_mutations get_vcf_mutations Public

   Forked from hwangjc/get_vcf_mutations

   Python script to scan vcf files and return lines with somatic/germline mutations. Also cleans up the data a little bit.

   Python

5. match_ids match_ids Public

   Matches a list of TCGA ids to a large file containing rows with TCGA ids.

   Python

6. TCGA-Query-Generator-Pipeline TCGA-Query-Generator-Pipeline Public

   Forked from Nolan1324/TCGA-Query-Generator-Pipeline

   A python command line version of my TCGAQueryGenerator C# project. Useful for pipelining and/or running on other Operating Systems.

   Python