Bio-based solutions, computational power, and 8 hours of sleep can change the world 🌱⚙️
- I like to build Ikea Furniture
- I like some phylosophy, expecially "Absurdism" by Camus.
- I have lived in many countried, and plan to keep doing so.
- A rhino almost killed me once
- I am frustrated by my dependece on food, if I could photosynthesise I would be so happy.
- I like to tinker, break, make, fix, add etc...
🧬 Bioinformatics and genomics
Microbial genomics, antimicrobial resistance, microbiome analysis, genome assembly, variant analysis, and clinical-genomic data integration
⚙️ Scientific workflows
Python, R, SQL, Nextflow, Snakemake, WDL, Docker, Terra.bio/GCP, and SLURM HPC
🧱 Scientific data systems
ETL pipelines, schema design, metadata harmonization, ontology reconciliation, provenance tracking, and analysis-ready datasets
🔍 Data quality and reliability
QC frameworks, validation logic, anomaly detection, batch-effect assessment, reproducibility, and tool-version tracking
🤖 Applied AI and machine learning
ML-ready biological datasets, experimental optimization, structured LLM workflows, human-in-the-loop systems, and scientific decision support
- cAMRah: A scalable WDL/Docker workflow for harmonized antimicrobial resistance gene prediction
- Biological Data QC Framework: Structured validation and ML-guided experimental decision support
- 16S Novelty Screening Pipeline: Reproducible ASV analysis with conservative, auditable classification
- Clinical-Genomic Data Harmonization: Schema design, metadata mapping, provenance, and OMOP-aligned exploration
- AI-Assisted Decision Platform: FastAPI, structured LLM outputs, ETL, and human-in-the-loop review