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  • Massachusetts General Hospital
  • Boston, MA

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EtienneChollet/README.md

Hi there! πŸ‘‹ I'm Etienne

I'm a biochemist by training, and software engineer by trade!

πŸ“š Education

  • Fairfield University (2017-2021): Bachelor of science in Biochemistry, Minor in Mathematics.
  • Yale University School of Medicine (2021-2022): Visiting Student, Department of Surgery.

πŸš€ Technical Skills

  • Programming Languages: Python, R, Swift, JavaScript, PHP, HTML, & LaTeX.
  • Libraries/Frameworks: PyTorch, TensorFlow, Keras, NumPy

πŸ—οΈ Projects

I am currently conducting research on the development of domain-randomized data augmentation strategies and computer vision. I am presently most enthusiastic about the following projects:

  • oct_vesselseg: A Label-Free and Data-Free Synthesis Engine and Training Framework for Vascular Segmentation of sOCT Data with PyTorch.
  • SynthShapes: A realistic 3D shape generator for biomedical image augmentation.

πŸ“œ Research

Journal/Conference Type Title Date
Medical Imaging with Deep Learning Conference/Short Paper A label-free and data-free training strategy for vasculature segmentation in serial sectioning OCT data July 2024
Journal of the American Chemical Society Journal Article Site-Specific Photochemistry along a Protonated Peptide Scaffold April 2024
Journal of Vascular Surgery Abstract Development of a Machine Learning Algorithm to Automate Occlusion Detection in Lower Extremity Conventional Angiograms April 2023
International Symposium on Molecular Spectroscopy Conference Uv Photofragment Spectroscopy And Electronic Energy Transfer On A Peptide Scaffold: The Case Of Near-degenerate Uv Chromophores June 2022
Preprint Preprint Neurovascular Segmentation in sOCT with Deep Learning and Synthetic Training Data ----

Pinned Loading

  1. ontomics ontomics Public

    Extract domain knowledge from codebases to reduce LLM token consumption by 20x and time in agentic search by 10x β€” gathers and makes concepts, naming conventions, and vocabulary queryable via MCP.

    Rust 40 8

  2. oct_vesselseg oct_vesselseg Public

    A Label-Free and Data-Free Synthesis Engine and Training Framework for Vascular Segmentation of sOCT Data with PyTorch.

    Python 6

  3. SynthShapes SynthShapes Public

    Generate Synthetic Shapes in 3D for Biomedical Image Augmentation and Synthesis.

    HTML 1