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1. scaden scaden Public

   Deep Learning based cell composition analysis with Scaden.

   Python 88 30

2. nf-core/cageseq nf-core/cageseq Public

   CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

   Nextflow 11 12

3. nanoR nanoR Public

   R package for analysis of NanoString data

   R 2 3