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Dict to cypher properties #56

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Merged
bechbd merged 22 commits into from
Apr 9, 2020
Merged

Dict to cypher properties #56

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dea4f03
fixed getting interlnational trials, with utf8 encoding
007vasy Apr 6, 2020
55958d2
urls to config
007vasy Apr 6, 2020
51ab12f
removed consol useage from scraping data
007vasy Apr 6, 2020
07409e4
confortable neo4j import setup
007vasy Apr 6, 2020
8cf111b
confortable edge inserting into neo4j
007vasy Apr 6, 2020
4e6c3ec
flexible insertion into neo4j
007vasy Apr 6, 2020
a4aa10f
add config
007vasy Apr 6, 2020
c96adf3
data scraping into class
007vasy Apr 7, 2020
c9c89f1
updated gitignore
007vasy Apr 7, 2020
3f6f5c5
all drugs and synonyms are imported
007vasy Apr 7, 2020
52be179
cleanup
007vasy Apr 7, 2020
6e554ef
refactor
007vasy Apr 7, 2020
7a030d6
filtering international studies
007vasy Apr 7, 2020
0d7e2e5
drug analysis
007vasy Apr 8, 2020
6df6b15
table merging WIP
007vasy Apr 9, 2020
1567927
studies normalized into one table from 2 different sources
007vasy Apr 9, 2020
2a9afb0
studies to neo4j is done
007vasy Apr 9, 2020
4c17c8c
WF
007vasy Apr 9, 2020
6c4bc2b
study import fix
007vasy Apr 9, 2020
46fdf2b
drug-study links
007vasy Apr 9, 2020
9aa0a13
cudf set up
007vasy Apr 9, 2020
212a9e2
dict to cypher property code merge for make it available for others
007vasy Apr 9, 2020
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flexible insertion into neo4j
  • Loading branch information
@007vasy
007vasy committed Apr 6, 2020
commit 4e6c3ec5cf3eb7c023119ba99d79d26081d1363d
46 changes: 10 additions & 36 deletions modules/TempNB/IngestDrugSynonyms.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -627,18 +627,9 @@
},
{
"cell_type": "code",
"execution_count": 92,
"execution_count": 94,
"metadata": {},
"outputs": [
{
"ename": "IndentationError",
"evalue": "expected an indented block (<ipython-input-92-e0c906e8b534>, line 14)",
"output_type": "error",
"traceback": [
"\u001b[0;36m File \u001b[0;32m\"<ipython-input-92-e0c906e8b534>\"\u001b[0;36m, line \u001b[0;32m14\u001b[0m\n\u001b[0;31m resp = session.write_transaction(self._merge_node, message)\u001b[0m\n\u001b[0m ^\u001b[0m\n\u001b[0;31mIndentationError\u001b[0m\u001b[0;31m:\u001b[0m expected an indented block\n"
]
}
],
"outputs": [],
"source": [
"class DrugSynonymDataToNeo4j(object):\n",
"\n",
Expand Down Expand Up @@ -669,7 +660,7 @@
" @staticmethod\n",
" def _merge_node(tx, node_type, properties=None):\n",
" data:dict = {\n",
" \"node_type\":node_type\n",
" \"node_type\":node_type,\n",
" \"properties\":self._dict_to_property_str(properties)\n",
" }\n",
" # '{first} {last}'.format(**data)\n",
Expand Down Expand Up @@ -718,41 +709,24 @@
},
{
"cell_type": "code",
"execution_count": 88,
"execution_count": 95,
"metadata": {},
"outputs": [],
"source": [
"test:dict = {\n",
" \"a\":\"B\",\n",
" \"c\":\"D\",\n",
"}"
]
"source": []
},
{
"cell_type": "code",
"execution_count": 90,
"execution_count": 96,
"metadata": {},
"outputs": [],
"source": [
"asd = \"asd,\""
]
"source": []
},
{
"cell_type": "code",
"execution_count": 91,
"execution_count": null,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"asd}\n"
]
}
],
"source": [
"print(asd[:-1]+\"}\")"
]
"outputs": [],
"source": []
},
{
"cell_type": "code",
Expand Down