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Added code to allow for passing in graph object to the DrugSynonymsTo… #65

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Merged
bechbd merged 1 commit into from
Apr 19, 2020
Merged

Added code to allow for passing in graph object to the DrugSynonymsTo… #65

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13 changes: 13 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -152,3 +152,16 @@ localKeys
localKeys/
modules/__pycache__/

.installed.cfg
bin
develop-eggs
dist
downloads
eggs
parts
*.egg-info
lib
lib64
__pycache__

neo4jcreds.json
5 changes: 3 additions & 2 deletions IngestDrugSynonymsWF.py
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@@ -1,6 +1,7 @@

from modules.IngestDrugSynonyms import IngestDrugSynonyms
from modules.DrugSynonymDataToNeo4j import DrugSynonymDataToNeo4j
from modules.Neo4jDataAccess import Neo4jDataAccess

import logging

Expand All @@ -11,7 +12,8 @@
drugSynonym.create_drug_study_links()
drugSynonym.create_url_study_links()

neo4jBridge = DrugSynonymDataToNeo4j()
neo4jBridge = DrugSynonymDataToNeo4j(
graph=Neo4jDataAccess().get_neo4j_graph(Neo4jDataAccess.RoleType.WRITER))

neo4jBridge.merge_drugs(drugSynonym.drugs)
neo4jBridge.merge_synonyms(drugSynonym.synonyms)
Expand All @@ -23,4 +25,3 @@

neo4jBridge.merge_url(drugSynonym.urls)
neo4jBridge.merge_url_to_study_rels(drugSynonym.url_points_at_study_edges)

12 changes: 12 additions & 0 deletions Pipfile
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@@ -0,0 +1,12 @@
[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true

[dev-packages]

[packages]
aiohttp = "*"

[requires]
python_version = "3.7"
111 changes: 111 additions & 0 deletions Pipfile.lock
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