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Add opt-in stderr progress flag for per-chromosome progress events

Status: Open.

#269 In brentp/mosdepth;

· carstenerickson opened on May 15, 2026

CRAM 3.1 slice decode failure in mosdepth v0.3.14 with bundled/static htslib

Status: Open.

#268 In brentp/mosdepth;

· grahamlbanes opened on May 5, 2026

Error processing BAM file generated by bwa-mem2

Status: Open.

#259 In brentp/mosdepth;

· Hoeze opened on Nov 19, 2025

Bug: Incorrect output v 0.3.10 in coverage of d4 vs summary.txt

Status: Open.

#254 In brentp/mosdepth;

· peterpru opened on Sep 12, 2025

--d4 missing from v0.3.11 from conda

Status: Open.

#251 In brentp/mosdepth;

· cademirch opened on Jul 15, 2025

How to use --d4?

Status: Open.

#247 In brentp/mosdepth;

· LudvigOlsen opened on Jan 17, 2025

Mosdepth fails when run with less than 8GB RAM on ~50MB CRAM

Status: Open.

#245 In brentp/mosdepth;

· dennishendriksen opened on Dec 9, 2024

Median is Only for Histogram

Status: Open.

#242 In brentp/mosdepth;

· DarioS opened on Nov 20, 2024

v3.9.0 not available via quay.io

Status: Open.

#240 In brentp/mosdepth;

· bartcharbon opened on Nov 14, 2024

Differences in WES Coverage Values (Mosdepth Versions 0.3.3 and 0.3.8)

Status: Open.

#234 In brentp/mosdepth;

· niyati1211 opened on Jun 13, 2024

: in region strings passed to --chrom

Status: Open.

#230 In brentp/mosdepth;

· julibeg opened on Apr 22, 2024

addition of min and max counts to prefix.regions.bed.gz

Status: Open.

#226 In brentp/mosdepth;

· joelarkman opened on Apr 9, 2024