I work with biological knowledge graphs, machine learning, and artificial intelligence to identify active molecules and to deconvolute their mechanisms of action.
🧰 My Projects
- 📮 Bioregistry: an integrative registry of biological databases, ontologies, and nomenclatures.
- 🧬 Biological Expression Language (BEL): a domain specific language for representing molecular biology
- 🌶️ PyBEL: the computational ecosystem for compiling, querying, and analyzing knowledge graphs encoded in BEL
- 📛 PyOBO: making ontologies and semantics accessible
- 🤖 PyKEEN: knowledge graph embedding models for humans
⚖️ My Core Scientific Values
- ♻️ Reproducibility: code is part of the scientific process. It should be documented and re-usable by anyone.
- 🔓 Openness: science is best when people can build on each others' work. Sharing data, code, and ideas has benefitted everyone, and is also the responsiblity of a scientist to pay forward.
- 🎯 Thoroughness: quality is dependent on taking great care throughout all steps
📫 My Interblag
Besides my email and blog (on the left), I'm also in the internet in the following places: