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1. DataBiosphere/toil DataBiosphere/toil Public

   A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

   Python 927 245

2. DFMDash DFMDash Public

   Easily drag-and-drop to build, run, and explore Dynamic Factor models in a browser-based GUI

   HTML 2

3. gene-outlier-detection gene-outlier-detection Public

   A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.

   Python 10 3

4. BD2KGenomics/toil-rnaseq BD2KGenomics/toil-rnaseq Public

   UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline

   Python 42 10

5. fastq_pair fastq_pair Public

   FASTQ pairing algorithms written in Rust

   Rust 5 1

6. blog blog Public

   Repository for posts / code that don't need their own repo

   Jupyter Notebook