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1. homer-docker-singularity homer-docker-singularity Public

   Build Docker container for Homer software and optionally convert to Singularity/Apptainer for running on HPC system

   Dockerfile 1

2. BaSH_seq BaSH_seq Public

   This pipeline processes high-throughput sequencing data (PE/SE) through QC,trim/filter,alignment,counting etc via sequential stages, with individual samples run in parallel via submission to a Slur…

   Shell 1

3. hisat2-docker-singularity hisat2-docker-singularity Public

   Build Docker container for HISAT2 and (optionally) convert to Apptainer/Singularity.

   Dockerfile 1

4. Default theme for ggplot Default theme for ggplot

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   ## Setting and modifying default theme for plots

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   theme_set(theme_gray(base_size=12, base_family="Arial") +

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               theme(

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                 panel.border=element_rect(colour="black", fill="transparent"), 

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                 plot.title=element_text(face="bold", hjust=0),