High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.
Pipeline for building topologically-constrained phylogenies from DNA barcode data
Parser of BLAST results
DNA barcoding analysis pipeline
Automated DNA barcoding pipeline: chromatogram → phylogeny → species ID. Zero coding required. Built for ENTM201L @ UC Riverside. Docker + GitHub Classroom ready.
Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.
Bioinformatic processes used to obtain invertebrate DNA barcodes from Illumina sequencing output
Tools for managing OTU definitions for barcoding fungi
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