./biology/hisat2, Alignment program for mapping next-generation sequencing reads

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Branch: CURRENT, Version: 2.2.1nb4, Package name: hisat2-2.2.1nb4, Maintainer: bacon

HISAT2 is a fast and sensitive alignment program for mapping next-generation
sequencing reads (both DNA and RNA) to a population of human genomes (as well
as to a single reference genome).


Required to run:
[lang/python37]

Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 6602.775 KB

Version history: (Expand)

CVS history: (Expand)


   2025-03-06 02:19:07 by Jason Bacon | Files touched by this commit (44) 
Log message:
Multiple packages: OWNER -> MAINTAINER
   2023-08-14 07:25:36 by Thomas Klausner | Files touched by this commit (1247) 
Log message:
*: recursive bump for Python 3.11 as new default
   2023-05-17 23:55:35 by Jason Bacon | Files touched by this commit (8) 
Log message:
biology/hisat2: Add SIMDE support

SIMDE enables SSE and other x86 intrinsics on other architectures
Tested on ARM64, may work on other 64-bit platforms
   2022-12-28 16:27:18 by Jason Bacon | Files touched by this commit (20) 
Log message:
Change MAINTAINER= to OWNER= on mission-critical packages
   2022-06-30 13:19:02 by Nia Alarie | Files touched by this commit (524) 
Log message:
*: Revbump packages that use Python at runtime without a PKGNAME prefix
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952) 
Log message:
*: recursive bump for perl 5.36
   2022-03-17 17:01:12 by Jason Bacon | Files touched by this commit (7) 
Log message:
biology/hisat2: Update to 2.2.1

pkgsrc fix: Unbreak build on Darwin

Add python3 support
Several bug fixes and enhancements
Changes: https://github.com/DaehwanKimLab/hisat2/tags
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes