./biology/mummer, System for aligning whole genome sequences

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Branch: CURRENT, Version: 3.20nb10, Package name: mummer-3.20nb10, Maintainer: pkgsrc-users

Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.


Required to run:
[lang/perl5]

Required to build:
[pkgtools/cwrappers]

Master sites:

Filesize: 3081.49 KB

Version history: (Expand)

CVS history: (Expand)


   2025-11-17 12:01:43 by Thomas Klausner | Files touched by this commit (709) 
Log message:
*: switch all sourceforge HOMEPAGEs to https
   2024-08-22 19:06:00 by Greg Troxel | Files touched by this commit (14) 
Log message:
various: Typos in MAINTAINER addresses
   2024-08-22 19:01:18 by Greg Troxel | Files touched by this commit (13) 
Log message:
various: Reset MAINTAINER

Email fails, and someone still at the same domain confirmed they are no
longer there.
   2022-06-28 13:38:00 by Thomas Klausner | Files touched by this commit (3952) 
Log message:
*: recursive bump for perl 5.36
   2021-10-26 12:03:45 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
   2021-10-07 15:19:44 by Nia Alarie | Files touched by this commit (73) 
Log message:
biology: Remove SHA1 hashes for distfiles
   2021-05-24 21:56:06 by Thomas Klausner | Files touched by this commit (3575) 
Log message:
*: recursive bump for perl 5.34
   2020-08-31 20:13:29 by Thomas Klausner | Files touched by this commit (3631) 
Log message:
*: bump PKGREVISION for perl-5.32.